PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7705.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 705aa    MW: 81460.8 Da    PI: 7.4091
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7705.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.51.8e-0798189490
       FAR1   4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +YA + GF+v ++++  + + +   ++r+f  +ke + +  ++      +  ++ +++++ tgCka ++   e ++ +++++++l+HnHel 
  Dca7705.1  98 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKKEPRYHMMDRLrlackKGGRKCSENSNVTGCKAVFEGAVE-NDGFQIKSVRLDHNHELD 189
                58*********99998887555555688888888877776666658888666677799999*********9999.999*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-598190IPR004330FAR1 DNA binding domain
PfamPF105511.8E-22310393IPR018289MULE transposase domain
PROSITE profilePS5096610.695530566IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-5532559IPR007527Zinc finger, SWIM-type
SMARTSM005759.0E-4541568IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MSSNNGGLFD LNEYFDEDFD GNYVFDEEIE ANEVHNDGRS VESVQNSIDE VGSTEESPNL  60
VQQAVNVVEA ENLNNEDIVE PKVGIIFPNC ESFDAFIFTY AMKKGFEVFT RSNVINPEYK  120
AAGVSREFGG KKEPRYHMMD RLRLACKKGG RKCSENSNVT GCKAVFEGAV ENDGFQIKSV  180
RLDHNHELDP ANSRFTISAR IITDYFKKRI LLNDRAGIPI TKNFNAMVLE AGGHENLPFN  240
RRDLRNLVNL ERRLERINGD AAALEEYFVK MKTDNPDFFY AIKKDNEGRL QNVFWVDARC  300
RAMFKVFGDV VTYDTIFLCN RYRLPFSPFI GVNHHGNSIC FAAALITNED TDTFIWVFER  360
WLECMGKAPP VILSDQDKAI GKAIETVFPA VVHDTLSEEK FEQSWSVMVD KFGVHDNVWI  420
KEAYNIRKRL ETGLRNFMTQ FDLAQQCKVE DERTQNFICK DRPLPYDKSI LVEEVFSKLY  480
TNEKFKEVKE QVYAGIRTFI ELVMRMGSYV VYKAEEQIVQ PFWKEGFRTY EVTIDKDMGV  540
FKCSCQLFEF KGILCKHIIQ CIVKENIKSI PETYILDRWR KDLIRGYEHI RFGYYNPEEV  600
KSVKRAMKLE NIVGIETVRS TLDANGILKV VGRRRVQPRE CNMRLIARNT TQRSNSQLKD  660
PIDKRGTGRG PKLKQTTNRK RKGGDIPQSP LSQRSRVSSE LELFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-61FAR1-related sequence 5